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    F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825174, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box family protein
    Primary source
    TAIR:AT3G60040
    Locus tag
    AT3G60040
    See related
    Araport:AT3G60040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (22175852..22179728, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340013.1
    NM_001340014.1
    NM_001340015.1
    NM_115867.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    F-box family protein
    NP_191563.1
    • F-box family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Pentatricopeptide repeat (InterPro:IPR002885), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G06630.2); Has 42185 Blast hits to 11085 proteins in 246 species: Archae - 5; Bacteria - 27; Metazoa - 105; Fungi - 161; Plants - 41065; Viruses - 0; Other Eukaryotes - 822 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22175852..22179728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340012.1 → NP_001325683.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM00

    2. NM_115867.2 → NP_191563.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191563.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FJE4
      Conserved Domains (8) summary
      smart00579
      Location:599 → 664
      FBD; domain in FBox and BRCT domain containing plant proteins
      TIGR00756
      Location:760 → 793
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00032
      Location:377 → 399
      LRR_2; leucine-rich repeat [structural motif]
      sd00004
      Location:726 → 753
      PPR; PPR repeat [structural motif]
      pfam00646
      Location:234 → 269
      F-box; F-box domain
      pfam01535
      Location:727 → 754
      PPR; PPR repeat
      pfam13041
      Location:722 → 770
      PPR_2; PPR repeat family
      cl14782
      Location:1 → 117
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8

    3. NM_001340013.1 → NP_001325684.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM01, A0A654FJE4

    4. NM_001340014.1 → NP_001325685.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM02

    5. NM_001340015.1 → NP_001325686.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM03
    Nucleotide Protein
    Heading Accession and Version

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