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    MATH domain/coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815089, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MATH domain/coiled-coil protein
    Primary source
    TAIR:AT2G05410
    Locus tag
    AT2G05410
    See related
    Araport:AT2G05410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16J10.4; F16J10_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (1976918..1978553)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Ubiquitin-specific protease family C19-related protein Neighboring gene TRAF-like family protein Neighboring gene Ubiquitin-specific protease family C19-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335281.1
    NM_126564.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    MATH domain/coiled-coil protein
    NP_178609.1
    • TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G05420.1); Has 465 Blast hits to 417 proteins in 24 species: Archae - 2; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 446; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1976918..1978553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126564.2 → NP_178609.1  MATH domain/coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178609.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F2Y5
      Conserved Domains (1) summary
      cd00121
      Location:1 → 95
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    2. NM_001335281.1 → NP_001323718.1  MATH domain/coiled-coil protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SHT3
      UniProtKB/TrEMBL
      A0A654F2Y5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHT3.2

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