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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818079, updated on 18-Sep-2024

    Summary

    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G35130
    Locus tag
    AT2G35130
    See related
    Araport:AT2G35130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4C15.20; T4C15_20
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (14807449..14810229, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transcription activator Neighboring gene Single hybrid motif superfamily protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene EXORDIUM like 7

    General gene information

    NM_001202753.1
    NM_001336541.1
    NM_129066.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001189682.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1).
    NP_181058.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 54782 Blast hits to 14810 proteins in 305 species: Archae - 4; Bacteria - 41; Metazoa - 619; Fungi - 795; Plants - 51459; Viruses - 0; Other Eukaryotes - 1864 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14807449..14810229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202753.1NP_001189682.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189682.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IJS7
      Conserved Domains (5) summary
      TIGR00756
      Location:322356
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:323350
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:497527
      PPR; PPR repeat
      pfam12854
      Location:385418
      PPR_1; PPR repeat
      pfam13041
      Location:319368
      PPR_2; PPR repeat family
    2. NM_001336541.1NP_001323666.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXP9
    3. NM_129066.2NP_181058.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181058.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82178
      Conserved Domains (4) summary
      TIGR00756
      Location:300334
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:301328
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:363396
      PPR_1; PPR repeat
      pfam13041
      Location:297346
      PPR_2; PPR repeat family