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    PIN domain-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819231, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PIN domain-like family protein
    Primary source
    TAIR:AT2G46230
    Locus tag
    AT2G46230
    See related
    Araport:AT2G46230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3F17.12
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (18984199..18985959, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DUF2358 family protein (DUF2358) Neighboring gene ncRNA Neighboring gene ABI-1-like 1 Neighboring gene BCL-2-associated athanogene 6 Neighboring gene myosin heavy chain-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084599.1
    NM_130186.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PIN domain-like family protein
    NP_001078068.1
    • PIN domain-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 609 Blast hits to 609 proteins in 228 species: Archae - 22; Bacteria - 0; Metazoa - 231; Fungi - 162; Plants - 97; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
    NP_566068.1
    • PIN domain-like family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 697 Blast hits to 697 proteins in 237 species: Archae - 32; Bacteria - 0; Metazoa - 241; Fungi - 212; Plants - 105; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18984199..18985959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130186.5 → NP_566068.1  PIN domain-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566068.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYY9, A0A5S9VYP7, A0A654ED56, O82346, Q9ASQ0
      Conserved Domains (1) summary
      cd09864
      Location:53 → 183
      PIN_Fcf1-like; VapC-like PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs

    2. NM_001084599.1 → NP_001078068.1  PIN domain-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078068.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VYP7, A0A654ED56, A8MRJ0
      Conserved Domains (1) summary
      cd09864
      Location:51 → 167
      PIN_Fcf1; PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs
    Nucleotide Protein
    Heading Accession and Version

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