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    scpl38 serine carboxypeptidase-like 38 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815137, updated on 18-Sep-2024

    Summary

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    Official Symbol
    scpl38
    Official Full Name
    serine carboxypeptidase-like 38
    Primary source
    TAIR:AT2G05850
    Locus tag
    AT2G05850
    See related
    Araport:AT2G05850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    serine carboxypeptidase-like 38; T6P5.5; T6P5_5
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    Genomic context

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    See scpl38 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (2242545..2244851, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 20S proteasome subunit PAA2 Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126598.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 38
    NP_178642.1
    • serine carboxypeptidase-like 38 (scpl38); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 36 (TAIR:AT3G52000.1); Has 3643 Blast hits to 3575 proteins in 391 species: Archae - 0; Bacteria - 253; Metazoa - 637; Fungi - 855; Plants - 1461; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2242545..2244851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126598.4 → NP_178642.1  serine carboxypeptidase-like 38 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178642.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZUG3
      UniProtKB/TrEMBL
      A0A7G2E5N3
      Conserved Domains (1) summary
      pfam00450
      Location:68 → 480
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUG3.1

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