U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NIP3;1 NOD26-like intrinsic protein 3;1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840079, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NIP3;1
    Official Full Name
    NOD26-like intrinsic protein 3;1
    Primary source
    TAIR:AT1G31885
    Locus tag
    AT1G31885
    See related
    Araport:AT1G31885
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5M6.28; F5M6_28; NOD26-like intrinsic protein 3;1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NIP3;1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (11450315..11452068)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor of RES complex protein Neighboring gene DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein Neighboring gene GHMP kinase family protein Neighboring gene miscRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis NIP3;1 Plays an Important Role in Arsenic Uptake and Root-to-Shoot Translocation under Arsenite Stress Conditions. Xu W, et al. Mol Plant, 2015 May. PMID 25732589
    2. Homology modeling of representative subfamilies of Arabidopsis major intrinsic proteins. Classification based on the aromatic/arginine selectivity filter. Wallace IS, et al. Plant Physiol, 2004 Jun. PMID 15181215, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NIP3;1 is involved in arsenite uptake and root-to-shoot translocation.
      Title: Arabidopsis NIP3;1 Plays an Important Role in Arsenic Uptake and Root-to-Shoot Translocation under Arsenite Stress Conditions.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_001332987.1
    NM_102926.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NOD26-like intrinsic protein 3;1
    NP_174472.2
    • NOD26-like intrinsic protein 3;1 (NIP3;1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 1;2 (TAIR:AT4G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11450315..11452068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332986.1 → NP_001323362.1  NOD26-like intrinsic protein 3;1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCZ7, A0A1P8AWV8, A0A5S9WKH3

    2. NM_102926.3 → NP_174472.2  NOD26-like intrinsic protein 3;1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174472.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C6T0
      UniProtKB/TrEMBL
      A0A178WCZ7, A0A5S9WKH3
      Conserved Domains (1) summary
      cl00200
      Location:37 → 271
      MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...

    3. NM_001332987.1 → NP_001323363.1  NOD26-like intrinsic protein 3;1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWT2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C6T0.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.