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    valyl-tRNA synthetase / valine-tRNA ligase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839605, updated on 18-Sep-2024

    Summary

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    Official Full Name
    valyl-tRNA synthetase / valine-tRNA ligase-like protein
    Primary source
    TAIR:AT1G27160
    Locus tag
    AT1G27160
    See related
    Araport:AT1G27160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7N9.22; T7N9_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (9432418..9433190)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase tau 14 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene transmembrane receptors / ATP binding protein Neighboring gene disease resistance protein (TIR-NBS-LRR class)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables valine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in valyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    valyl-tRNA synthetase / valine-tRNA ligase-like protein
    NP_174036.1
    • valyl-tRNA synthetase / valine--tRNA ligase-related; FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, valyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 7044 Blast hits to 7043 proteins in 2564 species: Archae - 124; Bacteria - 5116; Metazoa - 229; Fungi - 143; Plants - 103; Viruses - 0; Other Eukaryotes - 1329 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9432418..9433190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102478.1 → NP_174036.1  valyl-tRNA synthetase / valine-tRNA ligase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174036.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HR51, Q9LFX2
      Conserved Domains (1) summary
      pfam08264
      Location:5 → 125
      Anticodon_1; Anticodon-binding domain of tRNA
    Nucleotide Protein
    Heading Accession and Version

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