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    PGSIP5 plant glycogenin-like starch initiation protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837420, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGSIP5
    Official Full Name
    plant glycogenin-like starch initiation protein 5
    Primary source
    TAIR:AT1G08990
    Locus tag
    AT1G08990
    See related
    Araport:AT1G08990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7G19.14; F7G19_14; Glucuronic Acid Substitution of Xylan 5; GUX5; plant glycogenin-like starch initiation protein 5
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    Genomic context

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    See PGSIP5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (2888427..2890965)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene amidase 1 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene NPK1-related protein kinase 1 Neighboring gene glycoside hydrolase family 2 protein Neighboring gene sucrose nonfermenting-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases. Rennie EA, et al. Plant Physiol, 2012 Aug. PMID 22706449, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100770.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant glycogenin-like starch initiation protein 5
    NP_172373.3
    • plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2888427..2890965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100770.5 → NP_172373.3  plant glycogenin-like starch initiation protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172373.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HZC3, O04031
      UniProtKB/TrEMBL
      A0A178W4L8, W8QPB2
      Conserved Domains (1) summary
      cd02537
      Location:278 → 516
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HZC3.1

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