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    BGAL8 beta-galactosidase 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817395, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BGAL8
    Official Full Name
    beta-galactosidase 8
    Primary source
    TAIR:AT2G28470
    Locus tag
    AT2G28470
    See related
    Araport:AT2G28470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    beta-galactosidase 8; T17D12.3; T17D12_3
    Summary
    putative beta-galactosidase (BGAL8 gene)
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    Genomic context

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    See BGAL8 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Sequence:
    Chromosome: 2; NC_003071.7 (12168840..12173991, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proline-rich family protein Neighboring gene zinc finger (CCCH-type) family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein Neighboring gene RmlC-like cupins superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202695.2
    NM_001336165.1
    NM_001336166.1
    NM_001336167.1
    NM_179790.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase 8
    NP_001189624.1
    • beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1).
    NP_850121.1
    • beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1); Has 2800 Blast hits to 2372 proteins in 478 species: Archae - 15; Bacteria - 1080; Metazoa - 760; Fungi - 211; Plants - 631; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12168840..12173991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179790.3 → NP_850121.1  beta-galactosidase 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850121.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96257, Q9SCV4, Q9SK11
      UniProtKB/TrEMBL
      A0A654F220
      Conserved Domains (4) summary
      PLN03059
      Location:30 → 852
      PLN03059; beta-galactosidase; Provisional
      pfam01301
      Location:38 → 342
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam02140
      Location:774 → 851
      Gal_Lectin; Galactose binding lectin domain
      pfam13364
      Location:629 → 665
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    2. NM_001202695.2 → NP_001189624.1  beta-galactosidase 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189624.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F220, F4IIQ3
      Conserved Domains (4) summary
      PLN03059
      Location:24 → 846
      PLN03059; beta-galactosidase; Provisional
      pfam01301
      Location:32 → 336
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam02140
      Location:768 → 845
      Gal_Lectin; Galactose binding lectin domain
      pfam13364
      Location:623 → 659
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    3. NM_001336165.1 → NP_001324192.1  beta-galactosidase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q96257, Q9SCV4, Q9SK11
      UniProtKB/TrEMBL
      A0A654F220

    4. NM_001336166.1 → NP_001324193.1  beta-galactosidase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F220, F4IIQ3

    5. NM_001336167.1 → NP_001324194.1  beta-galactosidase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZB4, A0A654F220
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCV4.2

    Gene LinkOut

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