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    AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818229, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AT hook motif DNA-binding family protein
    Primary source
    TAIR:AT2G36560
    Locus tag
    AT2G36560
    See related
    Araport:AT2G36560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1O11.19; F1O11_19
    Summary
    A paternally expressed imprinted gene.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (15329138..15332447, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene haloacid dehalogenase-like hydrolase family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Pyruvate kinase family protein Neighboring gene proline transporter 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129212.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AT hook motif DNA-binding family protein
    NP_181195.1
    • AT hook motif DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 3707 Blast hits to 1497 proteins in 203 species: Archae - 2; Bacteria - 99; Metazoa - 609; Fungi - 221; Plants - 729; Viruses - 1; Other Eukaryotes - 2046 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15329138..15332447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129212.3 → NP_181195.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181195.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SJQ2
      Conserved Domains (1) summary
      pfam03479
      Location:108 → 223
      DUF296; Domain of unknown function (DUF296)
    Nucleotide Protein
    Heading Accession and Version

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