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    OCT6 organic cation/carnitine transporter 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838207, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OCT6
    Official Full Name
    organic cation/carnitine transporter 6
    Primary source
    TAIR:AT1G16370
    Locus tag
    AT1G16370
    See related
    Araport:AT1G16370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6; ATOCT6; F3O9.17; F3O9_17; organic cation/carnitine transporter 6
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    Genomic context

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    See OCT6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5596633..5598447)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Aldolase superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein Neighboring gene Cation/hydrogen exchanger family protein Neighboring gene organic cation/carnitine transporter 3 Neighboring gene cytochrome P450, family 79, subfamily F, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane. Küfner I, et al. BMC Res Notes, 2008 Jul 11. PMID 18710496, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101503.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    organic cation/carnitine transporter 6
    NP_173087.1
    • organic cation/carnitine transporter 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter5 (TAIR:AT1G79410.1); Has 15766 Blast hits to 15675 proteins in 1589 species: Archae - 347; Bacteria - 7462; Metazoa - 3764; Fungi - 2418; Plants - 1153; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5596633..5598447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101503.4 → NP_173087.1  organic cation/carnitine transporter 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173087.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SA36
      UniProtKB/TrEMBL
      A0A654ECC9
      Conserved Domains (2) summary
      PRK10077
      Location:220 → 314
      xylE; D-xylose transporter XylE; Provisional
      cd17378
      Location:88 → 494
      MFS_OCT_plant; Plant organic cation/carnitine transporters of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SA36.1

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