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    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838205, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    Primary source
    TAIR:AT1G16360
    Locus tag
    AT1G16360
    See related
    Araport:AT1G16360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3O9.16; F3O9_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (5593270..5595814, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cyclin b3;1 Neighboring gene Aldolase superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene organic cation/carnitine transporter 6 Neighboring gene Cation/hydrogen exchanger family protein Neighboring gene organic cation/carnitine transporter 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332223.1
    NM_001332225.1
    NM_101502.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    NP_173086.2
    • LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1); Has 865 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5593270..5595814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332222.1 → NP_001320562.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN78, A0A654EAG7, A0A7G2DTM5
      Conserved Domains (1) summary
      pfam03381
      Location:70 → 328
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

    2. NM_001332224.1 → NP_001320564.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN80, A0A7G2DTM5

    3. NM_101502.3 → NP_173086.2  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173086.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I2W8, Q682N7, Q9SA35
      UniProtKB/TrEMBL
      A0A7G2DTM5
      Conserved Domains (1) summary
      pfam03381
      Location:61 → 316
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

    4. NM_001332225.1 → NP_001320565.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN88

    5. NM_001332223.1 → NP_001320563.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN88
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SA35.2

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