U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    OBP32pep, putative (DUF220) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843384, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    OBP32pep, putative (DUF220)
    Primary source
    TAIR:AT1G70480
    Locus tag
    AT1G70480
    See related
    Araport:AT1G70480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J13.5; F24J13_5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (26561716..26563952)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root hair specific 10 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Ras-related small GTP-binding family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. JASSY, a chloroplast outer membrane protein required for jasmonate biosynthesis. Guan L, et al. Proc Natl Acad Sci U S A, 2019 May 21. PMID 31068459, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. indispensable for the export of jasmonate precursor 12-oxophytodienoic acid from the chloroplast
      Title: JASSY, a chloroplast outer membrane protein required for jasmonate biosynthesis.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_001036184.1
    NM_105716.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables monoatomic cation channel activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within jasmonic acid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    OBP32pep, putative (DUF220)
    NP_001031261.1
    • Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_564989.1
    • Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23560.1); Has 170 Blast hits to 157 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26561716..26563952
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105716.4 → NP_564989.1  OBP32pep, putative (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564989.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LCZ0, Q9CAL6
      Conserved Domains (2) summary
      pfam02713
      Location:164 → 235
      DUF220; Domain of unknown function DUF220
      cl14643
      Location:103 → 204
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    2. NM_001036184.1 → NP_001031261.1  OBP32pep, putative (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031261.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W459, F4I5G3
      Conserved Domains (2) summary
      pfam02713
      Location:182 → 253
      DUF220; Domain of unknown function DUF220
      cl14643
      Location:121 → 222
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.