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    Ran BP2/NZF zinc finger-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843402, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ran BP2/NZF zinc finger-like superfamily protein
    Primary source
    TAIR:AT1G70650
    Locus tag
    AT1G70650
    See related
    Araport:AT1G70650
    Gene type
    protein coding
    RNA name
    miRNA
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5A18.17; F5A18_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (26638075..26642268)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene octicosapeptide/Phox/Bem1p (PB1) domain-containing protein Neighboring gene microRNA ath-MIR777 precursor Neighboring gene MMS ZWEI homologue 2 Neighboring gene Caleosin-related family protein Neighboring gene Caleosin-related family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    • mature miRNA accession:MIMAT0003936
    NM_105733.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ran BP2/NZF zinc finger-like superfamily protein
    NP_001185364.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1).
    NP_564993.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1); Has 972 Blast hits to 707 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 88; Plants - 413; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26638075..26642268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198435.1 → NP_001185364.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185364.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WTH1, A0A654ET03, F4I6V2
      Conserved Domains (4) summary
      smart00547
      Location:314 → 337
      ZnF_RBZ; Zinc finger domain
      smart00212
      Location:451 → 586
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
      sd00025
      Location:238 → 257
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:279 → 303
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_105733.3 → NP_564993.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564993.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDL0, F4I6V3
      Conserved Domains (3) summary
      smart00547
      Location:314 → 337
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:238 → 257
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:279 → 303
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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