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    tetratricopeptide repeat (TPR)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838344, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tetratricopeptide repeat (TPR)-containing protein
    Primary source
    TAIR:AT1G17680
    Locus tag
    AT1G17680
    See related
    Araport:AT1G17680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11A6.2; F11A6_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    17
    Sequence:
    Chromosome: 1; NC_003070.9 (6076071..6082395)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Asp Neighboring gene tRNA-Val Neighboring gene U3 small nucleolar RNA-associated protein Neighboring gene prenylated RAB acceptor 1.F1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332319.1
    NM_101630.5
    NM_180614.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat (TPR)-containing protein
    NP_173210.3
    • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 5584 Blast hits to 3296 proteins in 567 species: Archae - 79; Bacteria - 1266; Metazoa - 1500; Fungi - 759; Plants - 424; Viruses - 52; Other Eukaryotes - 1504 (source: NCBI BLink).
    NP_850945.1
    • tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80; Bacteria - 1266; Metazoa - 1500; Fungi - 759; Plants - 424; Viruses - 52; Other Eukaryotes - 1504 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6076071..6082395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101630.5 → NP_173210.3  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173210.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WK89, A0A654EAL3, Q8GUP0
      Conserved Domains (5) summary
      COG3118
      Location:145 → 284
      YbbN; Negative regulator of GroEL, contains thioredoxin-like and TPR-like domains [Posttranslational modification, protein turnover, chaperones]
      TIGR02917
      Location:234 → 485
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:156 → 181
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:398 → 426
      TPR; TPR repeat [structural motif]
      cl07879
      Location:611 → 666
      DnaG_DnaB_bind; DNA primase DnaG DnaB-binding

    2. NM_180614.3 → NP_850945.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850945.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WK89, A0A654EAL3, Q8GUP0
      Conserved Domains (5) summary
      COG3118
      Location:145 → 284
      YbbN; Negative regulator of GroEL, contains thioredoxin-like and TPR-like domains [Posttranslational modification, protein turnover, chaperones]
      TIGR02917
      Location:234 → 485
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:156 → 181
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:398 → 426
      TPR; TPR repeat [structural motif]
      cl07879
      Location:611 → 666
      DnaG_DnaB_bind; DNA primase DnaG DnaB-binding

    3. NM_001332319.1 → NP_001322831.1  tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WK89, A0A654EAL3, Q8GUP0
      Conserved Domains (5) summary
      COG3118
      Location:145 → 284
      YbbN; Negative regulator of GroEL, contains thioredoxin-like and TPR-like domains [Posttranslational modification, protein turnover, chaperones]
      TIGR02917
      Location:234 → 485
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:156 → 181
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:398 → 426
      TPR; TPR repeat [structural motif]
      cl07879
      Location:611 → 666
      DnaG_DnaB_bind; DNA primase DnaG DnaB-binding
    Nucleotide Protein
    Heading Accession and Version

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