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    RNA binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820444, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT3G12640
    Locus tag
    AT3G12640
    See related
    Araport:AT3G12640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (4014047..4017869)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene CTP synthase family protein Neighboring gene FASCICLIN-like arabinogalactan protein 14 precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338005.1
    NM_112099.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables poly(A) binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA binding (RRM/RBD/RNP motifs) family protein
    NP_566430.3
    • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G24350.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4014047..4017869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338003.1 → NP_001325954.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKF6, A0A654F7K2, Q9LTX1
      Conserved Domains (3) summary
      smart00360
      Location:505 → 576
      RRM; RNA recognition motif
      TIGR01622
      Location:450 → 596
      SF-CC1; splicing factor, CC1-like family
      cl02562
      Location:23 → 86
      PWI; PWI domain

    2. NM_001338004.1 → NP_001325953.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKF6, A0A654F7K2, Q9LTX1
      Conserved Domains (3) summary
      smart00360
      Location:505 → 576
      RRM; RNA recognition motif
      TIGR01622
      Location:450 → 596
      SF-CC1; splicing factor, CC1-like family
      cl02562
      Location:23 → 86
      PWI; PWI domain

    3. NM_112099.3 → NP_566430.3  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566430.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EHX7, F4J9U9
      Conserved Domains (3) summary
      smart00360
      Location:481 → 552
      RRM; RNA recognition motif
      COG0724
      Location:472 → 561
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl02562
      Location:23 → 86
      PWI; PWI domain

    4. NM_001338005.1 → NP_001325955.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKF6, A0A1I9LMT6
    Nucleotide Protein
    Heading Accession and Version

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