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    MEF22 mitochondrial editing factor 22 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820459, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEF22
    Official Full Name
    mitochondrial editing factor 22
    Primary source
    TAIR:AT3G12770
    Locus tag
    AT3G12770
    See related
    Araport:AT3G12770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mitochondrial editing factor 22; mitochondrial editing factor 22
    Summary
    Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
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    Genomic context

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    See MEF22 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (4056953..4059284, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ALA-interacting subunit 1 Neighboring gene zinc transporter 1 precursor Neighboring gene defective in cullin neddylation protein Neighboring gene ubiquitin-conjugating enzyme family protein Neighboring gene phosphoglycerate kinase 1 Neighboring gene short-chain dehydrogenase-reductase B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. Takenaka M, et al. J Biol Chem, 2010 Aug 27. PMID 20566637, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_112113.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial editing factor 22
    NP_187883.2
    • mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4056953..4059284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112113.4 → NP_187883.2  mitochondrial editing factor 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187883.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56Y62, Q9LTV8
      UniProtKB/TrEMBL
      A0A178VI66, A0A5S9XBR7
      Conserved Domains (2) summary
      PLN03077
      Location:42 → 692
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:391 → 418
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTV8.1

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