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    Yippee family putative zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820051, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Yippee family putative zinc-binding protein
    Primary source
    TAIR:AT3G08990
    Locus tag
    AT3G08990
    See related
    Araport:AT3G08990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16O11.5
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (2742826..2744974)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene proline-rich family protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202914.2
    NM_001337793.1
    NM_111733.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Yippee family putative zinc-binding protein
    NP_001189843.1
    • Yippee family putative zinc-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1).
    NP_187511.2
    • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 986 Blast hits to 986 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2742826..2744974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202914.2 → NP_001189843.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189843.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1ECM9, Q9SR97, Q9SS85
      UniProtKB/TrEMBL
      A0A178VDW8, A0A5S9XAX7
      Conserved Domains (1) summary
      pfam03226
      Location:12 → 101
      Yippee-Mis18; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

    2. NM_111733.4 → NP_187511.2  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187511.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1ECM9, Q9SR97, Q9SS85
      UniProtKB/TrEMBL
      A0A178VDW8, A0A5S9XAX7
      Conserved Domains (1) summary
      pfam03226
      Location:12 → 101
      Yippee-Mis18; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

    3. NM_001337793.1 → NP_001327715.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1ECM9, Q9SR97, Q9SS85
      UniProtKB/TrEMBL
      A0A178VDW8, A0A5S9XAX7
      Conserved Domains (1) summary
      pfam03226
      Location:12 → 101
      Yippee-Mis18; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR97.2

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