Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Ubiquitin-specific protease family C19-related protein
Primary source: TAIR:AT2G05400
Locus tag: AT2G05400
See related: Araport:AT2G05400
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F16J10.5; F16J10_5
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 3

Sequence:: Chromosome: 2; NC_003071.7 (1974886..1976570)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001124802.2

Supported by ESTs:

NM_001335280.1

Supported by ESTs:

NM_126563.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Ubiquitin-specific protease family C19-related protein

NP_001118274.1

Ubiquitin-specific protease family C19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G05410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_178608.2

Ubiquitin-specific protease family C19-related protein; BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G05410.1); Has 328 Blast hits to 301 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 324; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

1974886..1976570

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_126563.3 → NP_178608.2 Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_178608.2

Status: REVIEWED

UniProtKB/TrEMBL

Q8L7J1
NM_001335280.1 → NP_001323545.1 Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

Q9SHT4
NM_001124802.2 → NP_001118274.1 Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001118274.1

Status: REVIEWED

UniProtKB/TrEMBL

Q8L7J1