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    Uncharacterized protein family (UPF0016) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839138, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family (UPF0016)
    Primary source
    TAIR:AT1G25520
    Locus tag
    AT1G25520
    See related
    Araport:AT1G25520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J7.20; F2J7_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (8962087..8964564)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plasma-membrane choline transporter family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene phytochrome and flowering time regulatory protein (PFT1) Neighboring gene myb-like transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Homologous Proteins of the Manganese Transporter PAM71 Are Localized in the Golgi Apparatus and Endoplasmic Reticulum. Hoecker N, et al. Plants (Basel), 2020 Feb 13. PMID 32069796, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_102363.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in root hair IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein family (UPF0016)
    NP_173923.1
    • Uncharacterized protein family (UPF0016); INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G68650.1); Has 1806 Blast hits to 1733 proteins in 669 species: Archae - 27; Bacteria - 1021; Metazoa - 159; Fungi - 140; Plants - 210; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8962087..8964564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102363.4 → NP_173923.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173923.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LA33, Q9C6M1
      UniProtKB/TrEMBL
      A0A178WM18, A0A5S9VXZ3, A0A7G2DY25
      Conserved Domains (1) summary
      COG2119
      Location:5 → 230
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C6M1.1

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