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    HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828618, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HAD superfamily, subfamily IIIB acid phosphatase
    Primary source
    TAIR:AT4G25150
    Locus tag
    AT4G25150
    See related
    Araport:AT4G25150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24A6.12
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (12901534..12903151, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene peptide met sulfoxide reductase 4 Neighboring gene oleosin 1 Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene ncRNA Neighboring gene Uncharacterized conserved protein (UCP012943) Neighboring gene RNA polymerase III RPC4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118647.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HAD superfamily, subfamily IIIB acid phosphatase
    NP_194245.1
    • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT5G51260.1); Has 924 Blast hits to 919 proteins in 287 species: Archae - 0; Bacteria - 505; Metazoa - 2; Fungi - 0; Plants - 370; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12901534..12903151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118647.6 → NP_194245.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTK5, A0A5S9XW26, Q9SW12
      Conserved Domains (1) summary
      pfam03767
      Location:49 → 260
      Acid_phosphat_B; HAD superfamily, subfamily IIIB (Acid phosphatase)
    Nucleotide Protein
    Heading Accession and Version

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