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    Leucine-rich repeat transmembrane protein kinase protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829122, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat transmembrane protein kinase protein
    Primary source
    TAIR:AT4G29990
    Locus tag
    AT4G29990
    See related
    Araport:AT4G29990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6G3.20; F6G3_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (14665684..14670030, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene fasciclin-like arabinogalactan protein Neighboring gene Dihydropterin pyrophosphokinase / Dihydropteroate synthase Neighboring gene ATP-dependent RNA helicase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119145.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat transmembrane protein kinase protein
    NP_194728.1
    • Leucine-rich repeat transmembrane protein kinase protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, leaf whorl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: FLG22-induced receptor-like kinase 1 (TAIR:AT2G19190.1); Has 171907 Blast hits to 132045 proteins in 5043 species: Archae - 136; Bacteria - 15038; Metazoa - 48082; Fungi - 11262; Plants - 76060; Viruses - 464; Other Eukaryotes - 20865 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14665684..14670030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341987.1 → NP_001329318.1  Leucine-rich repeat transmembrane protein kinase protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT95, A0A1P8B7D5, Q39143

    2. NM_119145.3 → NP_194728.1  Leucine-rich repeat transmembrane protein kinase protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194728.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT95, Q39143, Q9SZV2
      Conserved Domains (5) summary
      smart00221
      Location:576 → 839
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:580 → 844
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:414 → 434
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12819
      Location:30 → 353
      Malectin_like; Carbohydrate-binding protein of the ER
      pfam13855
      Location:414 → 469
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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