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    tRNA/rRNA methyltransferase (SpoU) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829958, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA/rRNA methyltransferase (SpoU) family protein
    Primary source
    TAIR:AT4G38020
    Locus tag
    AT4G38020
    See related
    Araport:AT4G38020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.140; F20D10_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (17861435..17863098)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA binding with one finger 4.7 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene Exostosin family protein Neighboring gene Xanthine/uracil permease family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119963.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA/rRNA methyltransferase (SpoU) family protein
    NP_195515.2
    • tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17861435..17863098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119963.4 → NP_195515.2  tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195515.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0A2, A0A5S9XZL5, A0A7G2FAT0, Q8GYL4
      Conserved Domains (1) summary
      cd18095
      Location:197 → 348
      SpoU-like_rRNA-MTase; SAM-dependent rRNA methylase related to SpoU-TrmH
    Nucleotide Protein
    Heading Accession and Version

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