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    hypothetical protein (duplicated DUF1399) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829946, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (duplicated DUF1399)
    Primary source
    TAIR:AT4G37900
    Locus tag
    AT4G37900
    See related
    Araport:AT4G37900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.20; F20D10_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (17821482..17824748, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene mitochondrial heat shock protein 70-1 Neighboring gene endoribonuclease E-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance. Ortega-Amaro MA, et al. Front Plant Sci, 2014. PMID 25653657, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119951.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of auxin mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (duplicated DUF1399)
    NP_195503.1
    • Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17821482..17824748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342460.1 → NP_001329025.1  hypothetical protein (duplicated DUF1399) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZJ2
      UniProtKB/TrEMBL
      A0A178V5M7, A0A654FWH4
      Conserved Domains (1) summary
      pfam07173
      Location:98 → 238
      GRDP-like; Glycine-rich domain-containing protein-like

    2. NM_119951.3 → NP_195503.1  hypothetical protein (duplicated DUF1399) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195503.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZJ2
      UniProtKB/TrEMBL
      A0A178V5M7, A0A654FWH4
      Conserved Domains (1) summary
      pfam07173
      Location:98 → 238
      GRDP-like; Glycine-rich domain-containing protein-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZJ2.1

    Gene LinkOut

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