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    Translin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814905, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translin family protein
    Primary source
    TAIR:AT2G03780
    Locus tag
    AT2G03780
    See related
    Araport:AT2G03780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19B11.23; F19B11_23
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (1152446..1154322, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene sulfotransferase 12 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene tRNA-Val Neighboring gene D-aminoacyl-tRNA deacylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335201.1
    NM_001335202.1
    NM_126425.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Translin family protein
    NP_178473.2
    • Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068); Has 561 Blast hits to 561 proteins in 195 species: Archae - 92; Bacteria - 2; Metazoa - 209; Fungi - 153; Plants - 36; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1152446..1154322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126425.4 → NP_178473.2  Translin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178473.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WWZ4, A0A654ET18, Q8GZ75
      Conserved Domains (1) summary
      pfam01997
      Location:66 → 264
      Translin; Translin family

    2. NM_001335201.1 → NP_001323482.1  Translin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX63

    3. NM_001335202.1 → NP_001323481.1  Translin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX91, A0A5S9WWZ4
    Nucleotide Protein
    Heading Accession and Version

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