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    UBP3 ubiquitin-specific protease 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830150, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP3
    Official Full Name
    ubiquitin-specific protease 3
    Primary source
    TAIR:AT4G39910
    Locus tag
    AT4G39910
    See related
    Araport:AT4G39910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATUBP3; T5J17.80; T5J17_80; ubiquitin-specific protease 3
    Summary
    Encodes a nuclear ubiquitin-specific protease.
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    Genomic context

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    See UBP3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (18511521..18514382, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RAB GTPase homolog H1C Neighboring gene adenine deaminase Neighboring gene low-molecular-weight cysteine-rich 45 Neighboring gene C-CAP/cofactor C-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis. Doelling JH, et al. Plant Physiol, 2007 Nov. PMID 17905865, Free PMC Article
    2. AtUBP3 and AtUBP4 are two closely related Arabidopsis thaliana ubiquitin-specific proteases present in the nucleus. Chandler JS, et al. Mol Gen Genet, 1997 Jul. PMID 9268021
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. This study reports on the characteristics of UBP3 and UBP4 in A. thaliana.
      Title: The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_120154.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-specific protease 3
    NP_568074.1
    • ubiquitin-specific protease 3 (UBP3); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 4 (TAIR:AT2G22310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18511521..18514382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120154.5 → NP_568074.1  ubiquitin-specific protease 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568074.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24454
      UniProtKB/TrEMBL
      A0A5S9X050, A0A5S9Y067, A0A654FX33
      Conserved Domains (1) summary
      cd02663
      Location:24 → 365
      Peptidase_C19G; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24454.1

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