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    hydrolase family protein / HAD-superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823716, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hydrolase family protein / HAD-superfamily protein
    Primary source
    TAIR:AT3G45740
    Locus tag
    AT3G45740
    See related
    Araport:AT3G45740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (16790761..16793540)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Nucleotidyltransferase family protein Neighboring gene pseudo Neighboring gene Nucleotidyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_114443.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    enables zinc ion binding HDA PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hydrolase family protein / HAD-superfamily protein
    NP_190160.1
    • hydrolase family protein / HAD-superfamily protein; FUNCTIONS IN: copper ion binding, zinc ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA, CECR5 (InterPro:IPR006353), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357); Has 548 Blast hits to 526 proteins in 159 species: Archae - 8; Bacteria - 6; Metazoa - 128; Fungi - 307; Plants - 36; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16790761..16793540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339217.1 → NP_001325636.1  hydrolase family protein / HAD-superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6U7, A0A1I9LLU8
      Conserved Domains (1) summary
      TIGR01456
      Location:1 → 271
      CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

    2. NM_114443.3 → NP_190160.1  hydrolase family protein / HAD-superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190160.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5H7, A0A5S9XI54, Q9M169
      Conserved Domains (1) summary
      TIGR01456
      Location:39 → 365
      CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
    Nucleotide Protein
    Heading Accession and Version

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