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    hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823958, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein
    Primary source
    TAIR:AT3G48030
    Locus tag
    AT3G48030
    See related
    Araport:AT3G48030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (17725410..17728256, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated channel 16 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene RHO-related protein from plants 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular and physiological characterization of AtHIGD1 in Arabidopsis. Hwang ST, et al. Biochem Biophys Res Commun, 2017 Jun 10. PMID 28465235
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114672.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein
    NP_190386.1
    • hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to hypoxia; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Hypoxia induced protein, conserved region (InterPro:IPR007667); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G23980.1); Has 9958 Blast hits to 9934 proteins in 295 species: Archae - 0; Bacteria - 6; Metazoa - 2435; Fungi - 930; Plants - 5148; Viruses - 46; Other Eukaryotes - 1393 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17725410..17728256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339346.1 → NP_001326258.1  hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLA1, A0A1I9LNQ5

    2. NM_114672.1 → NP_190386.1  hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190386.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7X843, Q9SU66
      UniProtKB/TrEMBL
      A0A5S9XIT5, A0A654FDU8, A0A7G2ESC0
      Conserved Domains (3) summary
      COG5540
      Location:95 → 252
      COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd16454
      Location:206 → 249
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
      pfam04588
      Location:21 → 69
      HIG_1_N; Hypoxia induced protein conserved region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X843.2

    Gene LinkOut

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