U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825067, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    F-box family protein
    Primary source
    TAIR:AT3G58980
    Locus tag
    AT3G58980
    See related
    Araport:AT3G58980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (21794445..21797006, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene magnesium transporter 6 Neighboring gene miscRNA Neighboring gene isopropylmalate isomerase 1 Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_115760.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    F-box family protein
    NP_191457.2
    • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58920.1); Has 1957 Blast hits to 1579 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1956; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21794445..21797006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115760.2 → NP_191457.2  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191457.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3K9, P0C2G1, Q9LYT8
      UniProtKB/TrEMBL
      A0A654FJ28
      Conserved Domains (4) summary
      smart00579
      Location:374 → 440
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:128 → 153
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 49
      F-box; F-box domain
      pfam07723
      Location:452 → 480
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C2G1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools