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    RR13 response regulator 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817249, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RR13
    Official Full Name
    response regulator 13
    Primary source
    TAIR:AT2G27070
    Locus tag
    AT2G27070
    See related
    Araport:AT2G27070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARR13; response regulator 13; T20P8.12; T20P8_12
    Summary
    member of Response Regulator: B- Type
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    Genomic context

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    See RR13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (11556392..11560215, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene bZIP transcription factor (DUF630 and DUF632) Neighboring gene C2H2 zinc-finger protein SERRATE (SE)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two-component signal transduction pathways in Arabidopsis. Hwang I, et al. Plant Physiol, 2002 Jun. PMID 12068096, Free PMC Article
    2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables phosphorelay response regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    response regulator 13
    NP_001318296.1
    • response regulator 13 (RR13); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: response regulator 21 (TAIR:AT5G07210.1); Has 23369 Blast hits to 23309 proteins in 2411 species: Archae - 233; Bacteria - 19177; Metazoa - 5; Fungi - 117; Plants - 1946; Viruses - 0; Other Eukaryotes - 1891 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11556392..11560215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336100.1 → NP_001318296.1  response regulator 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IVP4, Q9ZVD3
      UniProtKB/TrEMBL
      A0A654EWJ1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVD3.2

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