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    BTR1L binding to TOMV RNA 1L (long form) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830322, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BTR1L
    Official Full Name
    binding to TOMV RNA 1L (long form)
    Primary source
    TAIR:AT5G04430
    Locus tag
    AT5G04430
    See related
    Araport:AT5G04430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BINDING TO TOMV RNA 1; binding to TOMV RNA 1L (long form); BINDING TO TOMV RNA 1S (SHORT FORM); BTR1; BTR1S; T19N18.7
    Summary
    Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.
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    Genomic context

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    See BTR1L in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (1250248..1253953, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene NAC domain containing protein 2 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RAP release 2, galactose-binding-like domain protein, putative (DUF1997) Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication. Fujisaki K, et al. Virology, 2008 Oct 25. PMID 18762309
    2. Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Wang P, et al. Proc Natl Acad Sci U S A, 2013 Jul 2. PMID 23776212, Free PMC Article
    3. Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. de la Fuente van Bentem S, et al. Nucleic Acids Res, 2006. PMID 16807317, Free PMC Article
    4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results suggest that BTR1 negatively regulates the local spread of tomato mosaic virus. [BTR1]
      Title: Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120525.4
    NM_180433.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation by virus of viral protein levels in host cell IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    binding to TOMV RNA 1L (long form)
    NP_196063.1
    • BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S); FUNCTIONS IN: single-stranded RNA binding, nucleic acid binding; INVOLVED IN: RNA splicing, regulation of viral protein levels in host cell; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850764.1
    • binding to TOMV RNA 1L (long form) (BTR1L); CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 3980; Fungi - 530; Plants - 787; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1250248..1253953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120525.4 → NP_196063.1  binding to TOMV RNA 1L (long form) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196063.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH67, F4JW99, Q9LZ82
      UniProtKB/TrEMBL
      A0A178U8H7, A0A7G2F758
      Conserved Domains (3) summary
      cd22437
      Location:123 → 191
      KH-I_BTR1_rpt2; second type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
      cd22513
      Location:34 → 106
      KH-I_BTR1_rpt1; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
      cd22514
      Location:234 → 304
      KH-I_BTR1_rpt3; third type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins

    2. NM_180433.3 → NP_850764.1  binding to TOMV RNA 1L (long form) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850764.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9H2, A0A5S9Y1L5
      Conserved Domains (3) summary
      cd22437
      Location:123 → 191
      KH-I_BTR1_rpt2; second type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
      cd22513
      Location:34 → 106
      KH-I_BTR1_rpt1; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
      cd22514
      Location:255 → 325
      KH-I_BTR1_rpt3; third type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana protein BTR1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZ82.1

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