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    RPA70B RPA70-kDa subunit B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830696, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPA70B
    Official Full Name
    RPA70-kDa subunit B
    Primary source
    TAIR:AT5G08020
    Locus tag
    AT5G08020
    See related
    Araport:AT5G08020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B; ATRPA70B; F13G24.220; F13G24_220; Replication Protein A 1B; RPA1B; RPA70-kDa subunit B
    Summary
    Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.
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    Genomic context

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    See RPA70B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (2571957..2575061)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene flavonoid protein Neighboring gene uncharacterized protein Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene mitochondrial import receptor subunit TOM5-like protein Neighboring gene wiskott-aldrich syndrome family protein, putative (DUF1118) Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two types of replication protein A in seed plants. Ishibashi T, et al. FEBS J, 2005 Jul. PMID 15978034
    2. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120884.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV-B IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RPA70-kDa subunit B
    NP_196419.1
    • RPA70-kDa subunit B (RPA70B); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA repair, response to UV-B, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G61000.1); Has 1056 Blast hits to 1045 proteins in 226 species: Archae - 10; Bacteria - 0; Metazoa - 213; Fungi - 147; Plants - 535; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2571957..2575061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120884.2 → NP_196419.1  RPA70-kDa subunit B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196419.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SD82
      UniProtKB/TrEMBL
      A0A178UED9, A0A5S9Y4K8, A0A654FZR2
      Conserved Domains (1) summary
      TIGR00617
      Location:4 → 599
      rpa1; replication factor-a protein 1 (rpa1)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SD82.1

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