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    CID13 CTC-interacting domain 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832515, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID13
    Official Full Name
    CTC-interacting domain 13
    Primary source
    TAIR:AT5G24440
    Locus tag
    AT5G24440
    See related
    Araport:AT5G24440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 13; T31K7.2; T31K7_2
    Summary
    RNA-binding protein, putative. Contains PAM2, PABC binding domain.
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    Genomic context

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    See CID13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (8345402..8347776, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 6-phosphogluconolactonase 5 Neighboring gene Calcium-dependent protein kinase (CDPK) family protein Neighboring gene Transcription factor IIIC, subunit 5 Neighboring gene RING-H2 zinc finger protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 13
    NP_197832.1
    • CTC-interacting domain 13 (CID13); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 10 (TAIR:AT3G49390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8345402..8347776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122352.1 → NP_197832.1  CTC-interacting domain 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197832.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGE6
      UniProtKB/TrEMBL
      A0A654G421, A0A7G2F9U0
      Conserved Domains (3) summary
      cd12459
      Location:135 → 214
      RRM1_CID8_like; RNA recognition motif 1 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:230 → 311
      RRM2_CID8_like; RNA recognition motif 2 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      pfam07145
      Location:64 → 78
      PAM2; Ataxin-2 C-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGE6.1

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