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    Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833960, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative endonuclease or glycosyl hydrolase
    Primary source
    TAIR:AT5G39640
    Locus tag
    AT5G39640
    See related
    Araport:AT5G39640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIJ24.14; MIJ24_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (15873039..15873269, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Vesicle transport v-SNARE family protein Neighboring gene ncRNA Neighboring gene Defensin-like (DEFL) family protein Neighboring gene transmembrane protein, putative (DUF679)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative endonuclease or glycosyl hydrolase
    NP_198780.1
    • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT4G20480.1); Has 176 Blast hits to 160 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15873039..15873269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123326.1 → NP_198780.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198780.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U990, A0A7G2FG98, F4KEH9
      Conserved Domains (1) summary
      cd10910
      Location:23 → 70
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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