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    Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834068, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactose oxidase/kelch repeat superfamily protein
    Primary source
    TAIR:AT5G40680
    Locus tag
    AT5G40680
    See related
    Araport:AT5G40680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNF13.24; MNF13_24
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (16288754..16290001)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase 2-2 Neighboring gene ATP12 protein-like protein Neighboring gene PQ-loop repeat family protein / transmembrane family protein Neighboring gene histone-lysine N-methyltransferase trithorax-like protein Neighboring gene transcriptional regulator ATRX-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution and selection patterns of plant F-box proteins with C-terminal kelch repeats. Schumann N, et al. Plant Physiol, 2011 Feb. PMID 21119043, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Galactose oxidase/kelch repeat superfamily protein
    NP_198884.1
    • Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G27150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16288754..16290001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123433.1 → NP_198884.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198884.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G6S2, Q9FM30
      Conserved Domains (2) summary
      sd00038
      Location:197 → 246
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:248 → 293
      Kelch_1; Kelch motif
    Nucleotide Protein
    Heading Accession and Version

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