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    DHHC-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834108, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DHHC-type zinc finger family protein
    Primary source
    TAIR:AT5G41060
    Locus tag
    AT5G41060
    See related
    Araport:AT5G41060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MEE6.13; MEE6_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (16435153..16437805)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene miscRNA Neighboring gene dsRNA-binding protein 5 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085218.2
    NM_001344380.1
    NM_001344381.1
    NM_123471.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein-cysteine S-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DHHC-type zinc finger family protein
    NP_001078687.1
    • DHHC-type zinc finger family protein; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G26935.1); Has 5132 Blast hits to 5125 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 730; Plants - 844; Viruses - 0; Other Eukaryotes - 1357 (source: NCBI BLink).
    NP_198922.1
    • DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G26935.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16435153..16437805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123471.4 → NP_198922.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198922.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLM3
      UniProtKB/TrEMBL
      A0A178UBG9, A0A5S9YAE6, A0A654G6W4
      Conserved Domains (1) summary
      pfam01529
      Location:147 → 273
      DHHC; DHHC palmitoyltransferase

    2. NM_001344380.1 → NP_001331237.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD91, A0A654G6W4, A0A7G2FJL0
      Conserved Domains (1) summary
      pfam01529
      Location:80 → 206
      DHHC; DHHC palmitoyltransferase

    3. NM_001344381.1 → NP_001331236.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD91, A0A654G6W4, A0A7G2FJL0
      Conserved Domains (1) summary
      pfam01529
      Location:80 → 206
      DHHC; DHHC palmitoyltransferase

    4. NM_001085218.2 → NP_001078687.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078687.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G6W4, A8MRY3
      Conserved Domains (1) summary
      pfam01529
      Location:132 → 258
      zf-DHHC; DHHC palmitoyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLM3.1

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