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    glucose-induced degradation-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818345, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glucose-induced degradation-like protein
    Primary source
    TAIR:AT2G37680
    Locus tag
    AT2G37680
    See related
    Araport:AT2G37680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M22.18; F13M22_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (15803243..15805673, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene far-red elongated hypocotyl 1 Neighboring gene phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase Neighboring gene Fatty acid hydroxylase superfamily Neighboring gene receptor lectin kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nuclear localization signal and the C-terminal region of FHY1 are required for transmission of phytochrome A signals. Zeidler M, et al. Plant J, 2004 Nov. PMID 15469493
    2. Arabidopsis fhl/fhy1 double mutant reveals a distinct cytoplasmic action of phytochrome A. Rösler J, et al. Proc Natl Acad Sci U S A, 2007 Jun 19. PMID 17566111, Free PMC Article
    3. The serine-rich N-terminal region of Arabidopsis phytochrome A is required for protein stability. Trupkin SA, et al. Plant Mol Biol, 2007 Mar. PMID 17160561
    4. Nuclear accumulation of the phytochrome A photoreceptor requires FHY1. Hiltbrunner A, et al. Curr Biol, 2005 Dec 6. PMID 16332538
    5. Arabidopsis FHY1 protein stability is regulated by light via phytochrome A and 26S proteasome. Shen Y, et al. Plant Physiol, 2005 Nov. PMID 16244150, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nuclear accumulation of the phytochrome A photoreceptor requires FHY1.
      Title: Nuclear accumulation of the phytochrome A photoreceptor requires FHY1.
    2. PhyA is directly involved in mediating the light-triggered down-regulation of FHY1, and the dark accumulation of FHY1 requires functional pleiotropic Constitutive Photomorphogenic/De-Etiolated/Fusca proteins.
      Title: Arabidopsis FHY1 protein stability is regulated by light via phytochrome A and 26S proteasome.
    3. It was demonstrated that the septin-related domain is important for FHY1 to transmit phyA signals.
      Title: The nuclear localization signal and the C-terminal region of FHY1 are required for transmission of phytochrome A signals.
    4. Arabidopsis fhi/fhy1 double mutants reveal a distinct cytoplasmic action of phytochrome A.
      Title: Arabidopsis fhl/fhy1 double mutant reveals a distinct cytoplasmic action of phytochrome A.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129324.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glucose-induced degradation-like protein
    NP_181304.2
    • CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15803243..15805673 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336670.1 → NP_001324308.1  glucose-induced degradation-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZS5

    2. NM_129324.3 → NP_181304.2  glucose-induced degradation-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181304.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNR2, A0A654EZR5, A8MQJ8
      Conserved Domains (1) summary
      pfam09783
      Location:30 → 200
      Vac_ImportDeg; Vacuolar import and degradation protein
    Nucleotide Protein
    Heading Accession and Version

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