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    F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835339, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box associated ubiquitination effector family protein
    Primary source
    TAIR:AT5G52620
    Locus tag
    AT5G52620
    See related
    Araport:AT5G52620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N7.11; F6N7_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (21348554..21349681, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene mitochondrial RNAediting factor 1 Neighboring gene heat shock-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box associated ubiquitination effector family protein
    NP_200074.1
    • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G57590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21348554..21349681 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124640.1 → NP_200074.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200074.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTF5
      UniProtKB/TrEMBL
      A0A178UPN2
      Conserved Domains (2) summary
      TIGR01640
      Location:107 → 341
      F_box_assoc_1; F-box protein interaction domain
      pfam08268
      Location:200 → 333
      FBA_3; F-box associated domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTF5.1

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