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    CTD small phosphatase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835569, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CTD small phosphatase-like protein
    Primary source
    TAIR:AT5G54790
    Locus tag
    AT5G54790
    See related
    Araport:AT5G54790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.5; MBG8_5; VASCULAR-RELATED UNKNOWN PROTEIN 4; VUP4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22253986..22255663, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene glucose 6-phosphate/phosphate translocator 1 Neighboring gene tryptophan synthase beta-subunit 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling. Grienenberger E, et al. Plant Physiol, 2014 Apr. PMID 24567189, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345100.1
    NM_124860.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in multidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xylem development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTD small phosphatase-like protein
    NP_200290.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22253986..22255663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124860.2 → NP_200290.2  CTD small phosphatase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200290.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BPG5, Q9FFU9
      UniProtKB/TrEMBL
      A0A654GB93

    2. NM_001345100.1 → NP_001330209.1  CTD small phosphatase-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA57, A0A1P8BA29
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BPG5.1

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