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    PPR superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835678, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPR superfamily protein
    Primary source
    TAIR:AT5G55840
    Locus tag
    AT5G55840
    See related
    Araport:AT5G55840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MWJ3.2; MWJ3_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (22597993..22602760)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene ncRNA Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345163.1
    NM_124966.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPR superfamily protein
    NP_200395.2
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22597993..22602760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345162.1 → NP_001331238.1  PPR superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDC0

    2. NM_124966.3 → NP_200395.2  PPR superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200395.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDC0
      Conserved Domains (4) summary
      TIGR00756
      Location:514 → 547
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:305 → 332
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:263 → 295
      PPR_1; PPR repeat
      pfam13041
      Location:266 → 315
      PPR_2; PPR repeat family

    3. NM_001345163.1 → NP_001331239.1  PPR superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K691, Q9LVQ5
      Conserved Domains (2) summary
      PLN03218
      Location:130 → 590
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:265 → 292
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVQ5.2

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