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    TET4 tetraspanin4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836144, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TET4
    Official Full Name
    tetraspanin4
    Primary source
    TAIR:AT5G60220
    Locus tag
    AT5G60220
    See related
    Araport:AT5G60220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15L12.11; F15L12_11; tetraspanin4
    Summary
    Member of TETRASPANIN family
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    Genomic context

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    See TET4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (24248920..24250117)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TARGET OF MONOPTEROS 6 Neighboring gene ROP interactive partner 5 Neighboring gene uncharacterized protein Neighboring gene splicing endonuclease 2 Neighboring gene uncharacterized protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tetraspanin4
    NP_200830.1
    • tetraspanin4 (TET4); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin3 (TAIR:AT3G45600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24248920..24250117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125415.2 → NP_200830.1  tetraspanin4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200830.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LSS4
      UniProtKB/TrEMBL
      A0A654GD49
      Conserved Domains (1) summary
      pfam00335
      Location:7 → 104
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSS4.1

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