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    AP2/B3-like transcriptional factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836135, updated on 18-Sep-2024

    Summary

    Official Full Name
    AP2/B3-like transcriptional factor family protein
    Primary source
    TAIR:AT5G60130
    Locus tag
    AT5G60130
    See related
    Araport:AT5G60130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGO3.11; MGO3_11
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (24211789..24213386, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pumilio 18 Neighboring gene target of early activation tagged (EAT) 2 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene AP2/B3-like transcriptional factor family protein

    Interactions

    General gene information

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus  

    General protein information

    Preferred Names
    AP2/B3-like transcriptional factor family protein
    NP_001190577.1
    • AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
    NP_001318844.1
    • AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24211789..24213386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345395.1 → NP_001330294.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAT2, A0A1P8BAD7
    2. NM_001345394.1 → NP_001318844.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JXH1, F4JXH2, Q4PSA6, Q9LVG1
      UniProtKB/TrEMBL
      A0A178UAT2, A0A654GCN9
      Conserved Domains (1) summary
      cd10017
      Location:12 → 107
      B3_DNA; Plant-specific B3-DNA binding domain
    3. NM_001203648.1 → NP_001190577.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190577.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAT2
      Conserved Domains (1) summary
      cd10017
      Location:12 → 107
      B3_DNA; Plant-specific B3-DNA binding domain
    4. NM_125406.2 → NP_200821.2  AP2/B3-like transcriptional factor family protein, partial [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAT2, A0A1P8BAC7
    5. NM_001345396.1 → NP_001330295.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAE5
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