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    TIN1 tunicamycin induced protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836572, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TIN1
    Official Full Name
    tunicamycin induced protein
    Primary source
    TAIR:AT5G64510
    Locus tag
    AT5G64510
    See related
    Araport:AT5G64510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUB3.3; MUB3_3; tunicamycin induced 1
    Summary
    Encodes Tunicamycin Induced 1(TIN1), a plant-speci#c ER stress-inducible protein. TIN1 mutation affects pollen surface morphology. Transcriptionally induced by treatment with the N-linked glyclsylation inhibitor tunicamycin.
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    Genomic context

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    See TIN1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25784404..25786385)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene tRNA-Val Neighboring gene ncRNA Neighboring gene homolog of X-ray repair cross complementing 2 (XRCC2)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the endoplasmic reticulum stress-inducible gene TIN1 causes abnormal pollen surface morphology in Arabidopsis. Iwata Y, et al. Plant Biotechnol (Tokyo), 2017. PMID 31275024, Free PMC Article
    2. Characterization of a plant-specific gene induced by endoplasmic reticulum stress in Arabidopsis thaliana. Iwata Y, et al. Biosci Biotechnol Biochem, 2010. PMID 20944397
    3. Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana. Kamauchi S, et al. FEBS J, 2005 Jul. PMID 15978049
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_125847.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen wall assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tunicamycin induced protein
    NP_201256.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25784404..25786385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125847.4 → NP_201256.2  tunicamycin induced protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201256.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A097PPM7, Q84JN2, Q9FLG7
      UniProtKB/TrEMBL
      A0A654GE01, A0A7G2FIP9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84JN2.1

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