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    ABCF5 general control non-repressible 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836607, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCF5
    Official Full Name
    general control non-repressible 5
    Primary source
    TAIR:AT5G64840
    Locus tag
    AT5G64840
    See related
    Araport:AT5G64840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGCN5; ATP-binding cassette F5; GCN5; general control non-repressible 5; MXK3.6; MXK3_6
    Summary
    member of GCN subfamily
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    Genomic context

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    See ABCF5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (25916722..25920254, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene thionin-like protein Neighboring gene uncharacterized protein Neighboring gene programmed cell death 2 C-terminal domain-containing protein Neighboring gene sorbin/SH3 domain protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Histone acetyltransferase GCN5-mediated regulation of long non-coding RNA At4 contributes to phosphate starvation response in Arabidopsis. Wang T, et al. J Exp Bot, 2019 Nov 18. PMID 31401648, Free PMC Article
    2. GENERAL CONTROL NONREPRESSED PROTEIN5-Mediated Histone Acetylation of FERRIC REDUCTASE DEFECTIVE3 Contributes to Iron Homeostasis in Arabidopsis. Xing J, et al. Plant Physiol, 2015 Aug. PMID 26002909, Free PMC Article
    3. GCN5 contributes to stem cuticular wax biosynthesis by histone acetylation of CER3 in Arabidopsis. Wang T, et al. J Exp Bot, 2018 May 25. PMID 29506042, Free PMC Article
    4. The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis. Stegmann M, et al. Plant Cell, 2012 Nov. PMID 23170036, Free PMC Article
    5. Nematode-induced changes of transporter gene expression in Arabidopsis roots. Hammes UZ, et al. Mol Plant Microbe Interact, 2005 Dec. PMID 16478044

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Histone acetyltransferase GCN5-mediated regulation of long non-coding RNA At4 contributes to phosphate starvation response in Arabidopsis.
      Title: Histone acetyltransferase GCN5-mediated regulation of long non-coding RNA At4 contributes to phosphate starvation response in Arabidopsis.
    2. Collectively, the data demonstrate that GCN5 is involved in stem cuticular wax accumulation by modulating CER3 expression via H3K9/14 acetylation, which underlines the important role of histone acetylation in cuticular wax biosynthesis.
      Title: GCN5 contributes to stem cuticular wax biosynthesis by histone acetylation of CER3 in Arabidopsis.
    3. GCN5 plays a critical role in FRD3-mediated iron homeostasis.
      Title: GENERAL CONTROL NONREPRESSED PROTEIN5-Mediated Histone Acetylation of FERRIC REDUCTASE DEFECTIVE3 Contributes to Iron Homeostasis in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125882.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to nematode HEP PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    general control non-repressible 5
    NP_201289.1
    • general control non-repressible 5 (GCN5); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G09930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25916722..25920254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125882.3 → NP_201289.1  general control non-repressible 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201289.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZN6, Q9LV93
      UniProtKB/TrEMBL
      A0A178UAA3, A0A5S9YH29
      Conserved Domains (1) summary
      COG0488
      Location:99 → 631
      Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LV93.1

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