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    Glycosyl hydrolase family 38 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836747, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase family 38 protein
    Primary source
    TAIR:AT5G66150
    Locus tag
    AT5G66150
    See related
    Araport:AT5G66150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K2A18.23; K2A18_23
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    25
    Sequence:
    Chromosome: 5; NC_003076.8 (26438839..26444434, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 3-dehydroquinate synthase Neighboring gene RADIATION SENSITIVE 17 Neighboring gene proteasome alpha subunit D2 Neighboring gene receptor homology region transmembrane domain ring H2 motif protein 1 Neighboring gene sulfurtransferase 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mannose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glycosyl hydrolase family 38 protein
    NP_201416.1
    • Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26438839..26444434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126013.2 → NP_201416.1  Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201416.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKW9
      UniProtKB/TrEMBL
      A0A5S9YHJ2
      Conserved Domains (3) summary
      cd10810
      Location:47 → 323
      GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
      smart00872
      Location:365 → 438
      Alpha-mann_mid; Alpha mannosidase, middle domain
      pfam07748
      Location:498 → 1031
      Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain

    2. NM_001345749.1 → NP_001332004.1  Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFL6, A0A5S9YHJ2

    3. NM_001345750.1 → NP_001332005.1  Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFM6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKW9.1

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