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    Integral membrane Yip1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832808, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Integral membrane Yip1 family protein
    Primary source
    TAIR:AT5G27490
    Locus tag
    AT5G27490
    See related
    Araport:AT5G27490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21A20.200; F21A20_200
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (9702835..9704743, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene seryl-tRNA synthetase / serine-tRNA ligase Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122631.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Integral membrane Yip1 family protein
    NP_198101.2
    • Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 530 Blast hits to 529 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 113; Plants - 90; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9702835..9704743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122631.4 → NP_198101.2  Integral membrane Yip1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198101.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U782, A0A5S9Y7L9, F4K4B8
      Conserved Domains (1) summary
      pfam04893
      Location:105 → 273
      Yip1; Yip1 domain
    Nucleotide Protein
    Heading Accession and Version

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