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    Peptidyl-tRNA hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831471, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidyl-tRNA hydrolase family protein
    Primary source
    TAIR:AT5G16140
    Locus tag
    AT5G16140
    See related
    Araport:AT5G16140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21H19.60; T21H19_60
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (5270160..5271963, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Ribosomal protein S7e family protein Neighboring gene plastidic GLC translocator Neighboring gene uncharacterized protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085124.3
    NM_121619.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aminoacyl-tRNA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Peptidyl-tRNA hydrolase family protein
    NP_001078593.1
    • Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G38290.2); Has 7903 Blast hits to 7899 proteins in 2585 species: Archae - 0; Bacteria - 5295; Metazoa - 47; Fungi - 77; Plants - 129; Viruses - 0; Other Eukaryotes - 2355 (source: NCBI BLink).
    NP_197118.1
    • Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G38290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5270160..5271963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121619.4 → NP_197118.1  Peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197118.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LF14
      UniProtKB/TrEMBL
      A0A178UB33
      Conserved Domains (1) summary
      cd02406
      Location:44 → 234
      CRS2; Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct ...

    2. NM_001085124.3 → NP_001078593.1  Peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078593.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LF14
      UniProtKB/TrEMBL
      A0A178UB33
      Conserved Domains (1) summary
      cd02406
      Location:44 → 234
      CRS2; Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LF14.1

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