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    40S ribosomal protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842129, updated on 18-Sep-2024

    Summary

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    Official Full Name
    40S ribosomal protein
    Primary source
    TAIR:AT1G57540
    Locus tag
    AT1G57540
    See related
    Araport:AT1G57540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25P12.4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (21309895..21311521, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene tRNA-Tyr Neighboring gene Low temperature and salt responsive protein family Neighboring gene myb domain protein 50

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084263.2
    NM_104550.4
    NM_202313.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    40S ribosomal protein
    NP_001077732.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_564723.1
    • unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974042.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21309895..21311521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084263.2 → NP_001077732.1  40S ribosomal protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077732.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ65, Q9FVU7

    2. NM_104550.4 → NP_564723.1  40S ribosomal protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564723.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ65, Q9FVU7

    3. NM_202313.3 → NP_974042.1  40S ribosomal protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974042.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ65, Q9FVU7
    Nucleotide Protein
    Heading Accession and Version

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