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    MED31 SOH1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832113, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MED31
    Official Full Name
    SOH1 family protein
    Primary source
    TAIR:AT5G19910
    Locus tag
    AT5G19910
    See related
    Araport:AT5G19910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.60; F28I16_60
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    Genomic context

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    See MED31 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6730978..6732990, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene PRLI-interacting factor Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203413.1
    NM_121998.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SOH1 family protein
    NP_001190342.1
    • MED31; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med31 (InterPro:IPR008831).
    NP_197491.2
    • MED31; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med31 (InterPro:IPR008831); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6730978..6732990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121998.5 → NP_197491.2  SOH1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197491.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K2N8, Q8VYB1
      UniProtKB/TrEMBL
      A0A178U9T7, A0A5S9Y6M1, A0A654G2L9
      Conserved Domains (1) summary
      pfam05669
      Location:29 → 122
      Med31; SOH1

    2. NM_001203413.1 → NP_001190342.1  SOH1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190342.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y6M1, A0A654G2L9
      Conserved Domains (1) summary
      pfam05669
      Location:29 → 119
      Med31; SOH1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYB1.1

    Gene LinkOut

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