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    HBP5 SOUL heme-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832136, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HBP5
    Official Full Name
    SOUL heme-binding family protein
    Primary source
    TAIR:AT5G20140
    Locus tag
    AT5G20140
    See related
    Araport:AT5G20140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtHBP5; F5O24.30; F5O24_30; haem-binding protein 5
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    Genomic context

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    See HBP5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (6798832..6800977, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Dynein light chain type 1 family protein Neighboring gene testis- and ovary-specific PAZ domain protein Neighboring gene sulfate adenylyltransferase subunit Neighboring gene SPX domain-containing protein 1 Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Disrupting the bimolecular binding of the haem-binding protein 5 (AtHBP5) to haem oxygenase 1 (HY1) leads to oxidative stress in Arabidopsis. Lee HJ, et al. J Exp Bot, 2012 Oct. PMID 22991161, Free PMC Article
    2. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Disrupting the binding of the AtHBP5 to haem oxygenase 1 (HY1) leads to oxidative stress.
      Title: Disrupting the bimolecular binding of the haem-binding protein 5 (AtHBP5) to haem oxygenase 1 (HY1) leads to oxidative stress in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001203416.1
    NM_122021.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    SOUL heme-binding family protein
    NP_001190345.1
    • SOUL heme-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790), SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1).
    NP_197514.2
    • SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790), SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6798832..6800977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122021.3 → NP_197514.2  SOUL heme-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197514.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKX2, A0A654G2X2, Q8VZ90
      Conserved Domains (2) summary
      pfam10184
      Location:62 → 172
      DUF2358; Uncharacterized conserved protein (DUF2358)
      pfam04832
      Location:205 → 371
      SOUL; SOUL heme-binding protein

    2. NM_001203416.1 → NP_001190345.1  SOUL heme-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190345.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKX2, F4K452
      Conserved Domains (2) summary
      pfam04832
      Location:218 → 361
      SOUL; SOUL heme-binding protein
      pfam10184
      Location:62 → 172
      DUF2358; Uncharacterized conserved protein (DUF2358)
    Nucleotide Protein
    Heading Accession and Version

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